PERSIMMON (DIOSPYROS KAKI L.) AND JOHNSONGRASS [SORGHUMHALEPENSE (L.) PERS.] ARE NEW NATURAL HOSTS OF PEACH LATENT MOSAIC VIROID

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dc.contributor.authorOksal, HD
dc.contributor.authorAydın, S
dc.contributor.authorBaran, M
dc.contributor.authorEmir, C
dc.contributor.authorKaranfil, A
dc.contributor.authorBozdoğan, Olcay
dc.contributor.authorSipahioglu, HM
dc.date.accessioned2022-03-09T08:31:10Z
dc.date.available2022-03-09T08:31:10Z
dc.date.issued2021en_US
dc.departmentMTÖ Üniversitesi, Ziraat Fakültesi, Bitki Koruma Bölümüen_US
dc.description.abstractPeach latent mosaic viroid (PLMVd) naturally infects stone fruits worldwide. Here, we report the first detection of PLMVd in persimmon (Diospyros kaki L.) and a weed Johnsongrass [Sorghum halepense (L.) Pers.]. Samples corresponding to 12 persimmon specimens and weeds nearby the persimmon trees were collected from a germplasm collection plot in Malatya (Turkey). Total RNAs were isolated using a silica-based method and the complete viroid genome was amplified by reverse transcriptase polymerase chain reaction (RT-PCR). From these samples, PLMVd was detected in 7 of the 12 persimmons and in Johnsongrass revealing 8 new sequence variants. Multiple alignment and phylogenetic analyses revealed that identified persimmon and Johnsongrass isolates clustered only with PLMVd-walnut isolates previously identified from same locality. The nucleotide sequences of PLMVd persimmon and Johnsongrass isolates showed 96.71-99.11% similarity with the PLMVd isolates detected in different fruit crops in the world. A single specific mutation identified in two PLMVd persimmon variants (-TH2 and-TH10) effectively changed the predicted secondary structure of the agent. The identification and the genetic analyses of PLMVd variants in persimmon and Johnsongrass confirm that the agent is a ubiquitous and genetically variable viroid that infects cultivated fruit and weeds worldwide.en_US
dc.identifier.citationOksal, H. D., Aydin, S., Baran, M., Emir, C., KARANFIL, A., Bozdoğan, O., & Sipahioglu, H. M. (2021). Persimmon (Diospyros kaki l.) and johnsongrass [sorghum halepense (l.) pers.] are new natural hosts of peach latent mosaic viroid. Applied Ecology and Environmental Research, 19(6), 4629-4639.en_US
dc.identifier.endpage4639en_US
dc.identifier.issn1589-1623en_US
dc.identifier.issue6en_US
dc.identifier.scopusqualityQ3en_US
dc.identifier.startpage4629en_US
dc.identifier.urihttps://hdl.handle.net/20.500.12899/563
dc.identifier.volume19en_US
dc.identifier.wosWOS:000725485200028en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherCORVINUS UNIV BUDAPESTVILLANYI UT 29/43, BUDAPEST H-1118, HUNGARYen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectPLMVden_US
dc.subjectRT-PCRen_US
dc.subjectTurkeyen_US
dc.subjectweeden_US
dc.subjectpersimmonen_US
dc.subjectidentificationen_US
dc.titlePERSIMMON (DIOSPYROS KAKI L.) AND JOHNSONGRASS [SORGHUMHALEPENSE (L.) PERS.] ARE NEW NATURAL HOSTS OF PEACH LATENT MOSAIC VIROIDen_US
dc.typeArticleen_US

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